3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01116

Details:

PFam ID : PF01116

PFam Domain Description : Fructose-bisphosphate aldolase class-II

Number of Sequence in 50% Dataset : 142

Number of Sequence in Full Dataset : 1567

Average sequence length: 294.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01116	A4VT67_STRSY_1_37	79.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01116	D1PPP9_9FIRM_1_329	100

Sequence based PCA Plot of the family - PF01116 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=16 Length=17
Motif2 Start=1 Length=8
Motif3 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay