3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01115

Details:

PFam ID : PF01115

PFam Domain Description : F-actin capping protein, beta subunit

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 110

Average sequence length: 219.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01115	Q8I3T2_PLAF7_5_243	59.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01115	B9QLT4_TOXGO_16_269	100

Sequence based PCA Plot of the family - PF01115 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=7 Length=8
Motif2 Start=214 Length=8
Motif3 Start=55 Length=8
Motif4 Start=195 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay