3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01113

Details:

PFam ID : PF01113

PFam Domain Description : Dihydrodipicolinate reductase, N-terminus

Number of Sequence in 50% Dataset : 233

Number of Sequence in Full Dataset : 1577

Average sequence length: 112.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01113	C0BBV4_9FIRM_1_37	90.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01113	Q5Z0L8_NOCFA_13_80	99.8

Sequence based PCA Plot of the family - PF01113 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=155 Length=8
Motif2 Start=111 Length=8
Motif3 Start=7 Length=8
Motif4 Start=133 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay