3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01111

Details:

PFam ID : PF01111

PFam Domain Description : Cyclin-dependent kinase regulatory subunit

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 149

Average sequence length: 70.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01111	A0CUF4_PARTE_9_81	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01111	Q4N085_THEPA_472_559	100

Sequence based PCA Plot of the family - PF01111 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=15 Length=8
Motif2 Start=36 Length=8
Motif3 Start=4 Length=8
Motif4 Start=63 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay