3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01109

Details:

PFam ID : PF01109

PFam Domain Description : Granulocyte-macrophage colony-stimulating factor

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 24

Average sequence length: 111.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01109	C5IFM2_CHICK_18_135	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01109	Q80XG1_PERMA_18_90	91.3

Sequence based PCA Plot of the family - PF01109 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=88 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay