3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01108

Details:

PFam ID : PF01108

PFam Domain Description : Tissue factor

Number of Sequence in 50% Dataset : 83

Number of Sequence in Full Dataset : 196

Average sequence length: 100.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01108	D9IL84_DANRE_2_102	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01108	C3Y7Q9_BRAFL_4_128	100

Sequence based PCA Plot of the family - PF01108 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=17
Motif2 Start=21 Length=8
Motif3 Start=50 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay