3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01107

Details:

PFam ID : PF01107

PFam Domain Description : Viral movement protein (MP)

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 152

Average sequence length: 168.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01107	A8YPG8_9VIRU_7_141	86.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01107	F2XXY4_9VIRU_842_1040	100

Sequence based PCA Plot of the family - PF01107 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay