3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01106

Details:

PFam ID : PF01106

PFam Domain Description : NifU-like domain

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 950

Average sequence length: 68.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01106	D1NDR5_HAEIF_1_38	75.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01106	Q1K3G7_DESAC_249_323	100

Sequence based PCA Plot of the family - PF01106 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=34 Length=20
Motif2 Start=7 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay