3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01105

Details:

PFam ID : PF01105

PFam Domain Description : emp24/gp25L/p24 family/GOLD

Number of Sequence in 50% Dataset : 280

Number of Sequence in Full Dataset : 870

Average sequence length: 175.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01105	E7LPB6_TRYCR_34_225	89.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01105	D0NPI2_PHYIT_1_125	99.8

Sequence based PCA Plot of the family - PF01105 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=146 Length=8
Motif3 Start=156 Length=8
Motif4 Start=81 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay