3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01098

Details:

PFam ID : PF01098

PFam Domain Description : Cell cycle protein

Number of Sequence in 50% Dataset : 523

Number of Sequence in Full Dataset : 2917

Average sequence length: 331.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01098	Q7XPY6_ORYSJ_1_100	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01098	C0D594_9CLOT_76_186	100

Sequence based PCA Plot of the family - PF01098 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=20
Motif2 Start=4 Length=8
Motif3 Start=85 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay