3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01097

Details:

PFam ID : PF01097

PFam Domain Description : Arthropod defensin

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 126

Average sequence length: 33.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01097	Q7XPY6_ORYSJ_1_100	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01097	A4GUC4_HAELO_35_67	100

Sequence based PCA Plot of the family - PF01097 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=23 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay