3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01096

Details:

PFam ID : PF01096

PFam Domain Description : Transcription factor S-II (TFIIS)

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 520

Average sequence length: 38.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01096	Q7XPY6_ORYSJ_1_100	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01096	F1NBF9_CHICK_288_312	100

Sequence based PCA Plot of the family - PF01096 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=21 Length=20
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay