3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01088

Details:

PFam ID : PF01088

PFam Domain Description : Ubiquitin carboxyl-terminal hydrolase, family 1

Number of Sequence in 50% Dataset : 109

Number of Sequence in Full Dataset : 485

Average sequence length: 187.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01088	D5G541_TUBMM_37_276	73.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01088	D5G541_TUBMM_37_276	100

Sequence based PCA Plot of the family - PF01088 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=232 Length=8
Motif2 Start=202 Length=8
Motif3 Start=192 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay