3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01087

Details:

PFam ID : PF01087

PFam Domain Description : Galactose-1-phosphate uridyl transferase, N-terminal domain

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 755

Average sequence length: 175.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01087	C1GYV3_PARBA_7_50	78.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01087	D3CRZ2_9ACTO_2_114	70

Sequence based PCA Plot of the family - PF01087 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=63 Length=8
Motif2 Start=51 Length=8
Motif3 Start=16 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay