3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01086

Details:

PFam ID : PF01086

PFam Domain Description : Clathrin light chain

Number of Sequence in 50% Dataset : 66

Number of Sequence in Full Dataset : 205

Average sequence length: 197.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01086	A9TG26_PHYPA_108_258	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01086	E7LIR1_TRYCR_6_76	99.5

Sequence based PCA Plot of the family - PF01086 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=92 Length=18
Motif3 Start=75 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay