3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01085

Details:

PFam ID : PF01085

PFam Domain Description : Hedgehog amino-terminal signalling domain

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 73

Average sequence length: 123.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01085	C3Y7N2_BRAFL_274_371	58.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01085	A7RW45_NEMVE_1_161	98.6

Sequence based PCA Plot of the family - PF01085 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=145 Length=8
Motif4 Start=116 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay