3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01083

Details:

PFam ID : PF01083

PFam Domain Description : Cutinase

Number of Sequence in 50% Dataset : 122

Number of Sequence in Full Dataset : 469

Average sequence length: 183.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01083	E6I831_ENTFA_157_262	88.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01083	E3L803_PUCGT_45_139	100

Sequence based PCA Plot of the family - PF01083 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=69 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay