3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01082

Details:

PFam ID : PF01082

PFam Domain Description : Copper type II ascorbate-dependent monooxygenase, N-terminal domain

Number of Sequence in 50% Dataset : 77

Number of Sequence in Full Dataset : 226

Average sequence length: 124.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01082	B3NDR5_DROER_208_354	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01082	B3NDR5_DROER_208_354	100

Sequence based PCA Plot of the family - PF01082 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=19 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay