3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01081

Details:

PFam ID : PF01081

PFam Domain Description : KDPG and KHG aldolase

Number of Sequence in 50% Dataset : 108

Number of Sequence in Full Dataset : 1097

Average sequence length: 190.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01081	Q9S1Q9_STRCO_2_60	89.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01081	D3FBU5_CONWI_14_226	100

Sequence based PCA Plot of the family - PF01081 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=9 Length=8
Motif2 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay