3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01079 Details: PFam ID : PF01079 PFam Domain Description : Hint module Number of Sequence in 50% Dataset : 85 Number of Sequence in Full Dataset : 186 Average sequence length: 186.4 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF01079F0WGE7_9STRA_446_60692.8 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF01079E9HQZ4_DAPPU_276_564100 Sequence based PCA Plot of the family - PF01079 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=185 Length=8Motif2 Start=173 Length=8Motif3 Start=82 Length=8Motif4 Start=9 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF01079
PFam Domain Description : Hint module
Number of Sequence in 50% Dataset : 85
Number of Sequence in Full Dataset : 186
Average sequence length: 186.4
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER