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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01079
Details:

PFam ID : PF01079

PFam Domain Description : Hint module

Number of Sequence in 50% Dataset : 85

Number of Sequence in Full Dataset : 186

Average sequence length: 186.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF01079F0WGE7_9STRA_446_60692.8
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF01079E9HQZ4_DAPPU_276_564100
Sequence based PCA Plot of the family - PF01079 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=185 Length=8
Motif2 Start=173 Length=8
Motif3 Start=82 Length=8
Motif4 Start=9 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay