3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01078

Details:

PFam ID : PF01078

PFam Domain Description : Magnesium chelatase, subunit ChlI

Number of Sequence in 50% Dataset : 50

Number of Sequence in Full Dataset : 1252

Average sequence length: 168.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01078	C1EEY6_MICSR_55_182	59.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01078	Q75MT5_HUMAN_46_138	100

Sequence based PCA Plot of the family - PF01078 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=35 Length=8
Motif2 Start=22 Length=8
Motif3 Start=9 Length=8
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay