3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01077

Details:

PFam ID : PF01077

PFam Domain Description : Nitrite and sulphite reductase 4Fe-4S domain

Number of Sequence in 50% Dataset : 203

Number of Sequence in Full Dataset : 4603

Average sequence length: 146.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01077	Q30R62_SULDN_385_474	79.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01077	C9YGK3_9BURK_637_746	99.5

Sequence based PCA Plot of the family - PF01077 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=76 Length=8
Motif3 Start=63 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay