3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01075

Details:

PFam ID : PF01075

PFam Domain Description : Glycosyltransferase family 9 (heptosyltransferase)

Number of Sequence in 50% Dataset : 773

Number of Sequence in Full Dataset : 2312

Average sequence length: 217.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01075	C9PJL9_VIBFU_236_341	84.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01075	D4DUW1_NEIEG_75_194	100

Sequence based PCA Plot of the family - PF01075 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=249 Length=8
Motif2 Start=7 Length=8
Motif3 Start=233 Length=11
Motif4 Start=280 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay