3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01074

Details:

PFam ID : PF01074

PFam Domain Description : Glycosyl hydrolases family 38 N-terminal domain

Number of Sequence in 50% Dataset : 156

Number of Sequence in Full Dataset : 800

Average sequence length: 267.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01074	E3YM81_9LIST_3_178	95.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01074	F2U4D3_9EUKA_425_755	99.8

Sequence based PCA Plot of the family - PF01074 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=25 Length=8
Motif2 Start=7 Length=17
Motif3 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay