3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01073

Details:

PFam ID : PF01073

PFam Domain Description : 3-beta hydroxysteroid dehydrogenase/isomerase family

Number of Sequence in 50% Dataset : 256

Number of Sequence in Full Dataset : 715

Average sequence length: 224.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01073	A3AIX7_ORYSJ_1_137	78.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01073	Q4CV22_TRYCR_88_244	99.8

Sequence based PCA Plot of the family - PF01073 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=17
Motif2 Start=149 Length=8
Motif3 Start=135 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay