3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01070

Details:

PFam ID : PF01070

PFam Domain Description : NADPH-dependent FMN reductase

Number of Sequence in 50% Dataset : 262

Number of Sequence in Full Dataset : 2259

Average sequence length: 249.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01070	E1KKZ3_9FIRM_27_228	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01070	IDI2_THEAC_9_179	100

Sequence based PCA Plot of the family - PF01070 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=10 Length=31

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay