3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01068

Details:

PFam ID : PF01068

PFam Domain Description : ATP dependent DNA ligase domain

Number of Sequence in 50% Dataset : 345

Number of Sequence in Full Dataset : 1769

Average sequence length: 186.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01068	E1KKZ3_9FIRM_27_228	94.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01068	C8SF49_9RHIZ_5_105	100

Sequence based PCA Plot of the family - PF01068 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=27 Length=8
Motif3 Start=267 Length=11
Motif4 Start=255 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay