3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01067

Details:

PFam ID : PF01067

PFam Domain Description : Calpain large subunit, domain III

Number of Sequence in 50% Dataset : 174

Number of Sequence in Full Dataset : 485

Average sequence length: 132.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01067	A0E1K3_PARTE_974_1101	91.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01067	D3ZXD1_RAT_353_461	100

Sequence based PCA Plot of the family - PF01067 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=11
Motif2 Start=129 Length=8
Motif3 Start=194 Length=8
Motif4 Start=27 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay