3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01066

Details:

PFam ID : PF01066

PFam Domain Description : CDP-alcohol phosphatidyltransferase

Number of Sequence in 50% Dataset : 613

Number of Sequence in Full Dataset : 4403

Average sequence length: 148.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01066	Q4N6J9_THEPA_14_321	99.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01066	D2W2A0_NAEGR_46_214	100

Sequence based PCA Plot of the family - PF01066 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=63 Length=11
Motif3 Start=47 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay