3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01065

Details:

PFam ID : PF01065

PFam Domain Description : Hexon, adenovirus major coat protein, N-terminal domain

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 182

Average sequence length: 226.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01065	Q9J0Z1_9ADEN_1_118	23.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01065	A4GVR4_9ADEN_1_150	97.2

Sequence based PCA Plot of the family - PF01065 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=50 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay