3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01064

Details:

PFam ID : PF01064

PFam Domain Description : Activin types I and II receptor domain

Number of Sequence in 50% Dataset : 85

Number of Sequence in Full Dataset : 239

Average sequence length: 85.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01064	A4PBT1_ORYLA_26_117	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01064	A8WXR7_CAEBR_26_101	92.4

Sequence based PCA Plot of the family - PF01064 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=46 Length=8
Motif4 Start=77 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay