3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01063

Details:

PFam ID : PF01063

PFam Domain Description : Aminotransferase class IV

Number of Sequence in 50% Dataset : 596

Number of Sequence in Full Dataset : 3456

Average sequence length: 227.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01063	C7MLV2_CRYCD_94_371	86.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01063	Q0U1U5_PHANO_1_118	100

Sequence based PCA Plot of the family - PF01063 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=183 Length=8
Motif2 Start=3 Length=11
Motif3 Start=201 Length=8
Motif4 Start=238 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay