3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01062

Details:

PFam ID : PF01062

PFam Domain Description : Bestrophin, RFP-TM, chloride channel

Number of Sequence in 50% Dataset : 307

Number of Sequence in Full Dataset : 843

Average sequence length: 238.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01062	E9PNM2_HUMAN_1_79	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01062	A4CXL4_SYNPV_18_193	100

Sequence based PCA Plot of the family - PF01062 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=230 Length=8
Motif3 Start=49 Length=11
Motif4 Start=271 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay