3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01061

Details:

PFam ID : PF01061

PFam Domain Description : ABC-2 type transporter

Number of Sequence in 50% Dataset : 0

Number of Sequence in Full Dataset : 6160

Average sequence length: 204.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01061	E3M7X5_CAERE_57_137	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01061	D2C5P3_THENR_2_300	32

Sequence based PCA Plot of the family - PF01061 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay