3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01060

Details:

PFam ID : PF01060

PFam Domain Description : Transthyretin-like family

Number of Sequence in 50% Dataset : 48

Number of Sequence in Full Dataset : 222

Average sequence length: 79.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01060	E3M7X5_CAERE_57_137	91.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01060	E1G9V4_LOALO_27_131	100

Sequence based PCA Plot of the family - PF01060 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=13 Length=8
Motif2 Start=49 Length=8
Motif3 Start=37 Length=8
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay