3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01059

Details:

PFam ID : PF01059

PFam Domain Description : NADH-ubiquinone oxidoreductase chain 4, amino terminus

Number of Sequence in 50% Dataset : 198

Number of Sequence in Full Dataset : 2425

Average sequence length: 105.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01059	Q5EM42_9FUNG_1_129	73.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01059	Q5EM42_9FUNG_1_129	95.7

Sequence based PCA Plot of the family - PF01059 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=50 Length=29
Motif2 Start=1 Length=19

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay