3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01058

Details:

PFam ID : PF01058

PFam Domain Description : NADH ubiquinone oxidoreductase, 20 Kd subunit

Number of Sequence in 50% Dataset : 93

Number of Sequence in Full Dataset : 1450

Average sequence length: 129.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01058	A8V3C4_9AQUI_1_70	94.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01058	A7NMN6_ROSCS_16_119	100

Sequence based PCA Plot of the family - PF01058 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=63 Length=8
Motif3 Start=181 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay