3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01056

Details:

PFam ID : PF01056

PFam Domain Description : Myc amino-terminal region

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 176

Average sequence length: 151.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01056	B4YRF1_9NEOB_1_51	78.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01056	F1MS90_BOVIN_1_109	93.7

Sequence based PCA Plot of the family - PF01056 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=31 Length=8
Motif2 Start=22 Length=8
Motif3 Start=1 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay