3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01055

Details:

PFam ID : PF01055

PFam Domain Description : Glycosyl hydrolases family 31

Number of Sequence in 50% Dataset : 409

Number of Sequence in Full Dataset : 1755

Average sequence length: 391.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01055	C3YUM9_BRAFL_301_857	79.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01055	C2FHH7_LACPA_156_207	99.7

Sequence based PCA Plot of the family - PF01055 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=241 Length=11
Motif2 Start=312 Length=11
Motif3 Start=344 Length=11
Motif4 Start=200 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay