3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01054

Details:

PFam ID : PF01054

PFam Domain Description : Mouse mammary tumour virus superantigen

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 18

Average sequence length: 168.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01054	E9M5J1_9GAMA_176_252	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01054	Q98343_MMTV_1_311	100

Sequence based PCA Plot of the family - PF01054 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay