3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01053

Details:

PFam ID : PF01053

PFam Domain Description : Cys/Met metabolism PLP-dependent enzyme

Number of Sequence in 50% Dataset : 300

Number of Sequence in Full Dataset : 3641

Average sequence length: 367.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01053	E3MFJ1_CAERE_13_110	62.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01053	C9L465_RUMHA_7_64	99.9

Sequence based PCA Plot of the family - PF01053 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=41 Length=8
Motif2 Start=183 Length=23
Motif3 Start=26 Length=8
Motif4 Start=140 Length=23

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay