3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01051

Details:

PFam ID : PF01051

PFam Domain Description : Initiator Replication protein

Number of Sequence in 50% Dataset : 282

Number of Sequence in Full Dataset : 629

Average sequence length: 213.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01051	C8KXR0_9PAST_15_278	81.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01051	D1WBM7_9LACO_8_195	99.0

Sequence based PCA Plot of the family - PF01051 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=14 Length=8
Motif3 Start=5 Length=8
Motif4 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay