3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01050

Details:

PFam ID : PF01050

PFam Domain Description : Mannose-6-phosphate isomerase

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 834

Average sequence length: 127.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01050	Q1GI24_SILST_299_422	65.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01050	A6MF04_ECOLX_317_467	100

Sequence based PCA Plot of the family - PF01050 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=8
Motif2 Start=108 Length=8
Motif3 Start=142 Length=8
Motif4 Start=81 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay