3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01049

Details:

PFam ID : PF01049

PFam Domain Description : Cadherin cytoplasmic region

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 236

Average sequence length: 131.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01049	Q4SSF9_TETNG_881_943	80.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01049	F1QK15_DANRE_2360_2528	99.5

Sequence based PCA Plot of the family - PF01049 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=88 Length=8
Motif4 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay