3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01047

Details:

PFam ID : PF01047

PFam Domain Description : MarR family

Number of Sequence in 50% Dataset : 619

Number of Sequence in Full Dataset : 4892

Average sequence length: 58.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01047	E9C1G4_9EUKA_2_239	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01047	A8TPG7_9PROT_45_103	100

Sequence based PCA Plot of the family - PF01047 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay