3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01044

Details:

PFam ID : PF01044

PFam Domain Description : Vinculin family

Number of Sequence in 50% Dataset : 99

Number of Sequence in Full Dataset : 260

Average sequence length: 317.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01044	E9C1G4_9EUKA_2_239	30.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01044	E9C3V9_9EUKA_3_372	92.6

Sequence based PCA Plot of the family - PF01044 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay