3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01042

Details:

PFam ID : PF01042

PFam Domain Description : Endoribonuclease L-PSP

Number of Sequence in 50% Dataset : 432

Number of Sequence in Full Dataset : 4070

Average sequence length: 119.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01042	A8KXH5_FRASN_10_73	58.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01042	B8BT07_THAPS_60_228	100

Sequence based PCA Plot of the family - PF01042 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=42 Length=11
Motif3 Start=21 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay