3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01041

Details:

PFam ID : PF01041

PFam Domain Description : DegT/DnrJ/EryC1/StrS aminotransferase family

Number of Sequence in 50% Dataset : 538

Number of Sequence in Full Dataset : 3274

Average sequence length: 335.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01041	E2NIN3_9BACE_1_41	82.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01041	D6PH88_9VIRU_1_143	100

Sequence based PCA Plot of the family - PF01041 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=17
Motif2 Start=13 Length=8
Motif3 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay