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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01039
Details:

PFam ID : PF01039

PFam Domain Description : Carboxyl transferase domain

Number of Sequence in 50% Dataset : 153

Number of Sequence in Full Dataset : 3090

Average sequence length: 343.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF01039C2ZKM9_BACCE_1_12873.0
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF01039Q3V4F9_FESAR_1_10999.8
Sequence based PCA Plot of the family - PF01039 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=107 Length=11
Motif2 Start=162 Length=8
Motif3 Start=38 Length=8
Motif4 Start=50 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay