3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01039 Details: PFam ID : PF01039 PFam Domain Description : Carboxyl transferase domain Number of Sequence in 50% Dataset : 153 Number of Sequence in Full Dataset : 3090 Average sequence length: 343.8 Pairwise Identity of Sequence in 50% Dataset : 31.3 FASSM Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF01039C2ZKM9_BACCE_1_12873.0 HMMER Based Coverage Results:Pfam IDBest ProfileCoverage of Best ProfilePF01039Q3V4F9_FESAR_1_10999.8 Sequence based PCA Plot of the family - PF01039 : BRP of Green color is by FASSM and of Red color is by HMMER PSIMOT-Motifs Extracted using PSIMOT:There are 4 motifsMotif1 Start=107 Length=11Motif2 Start=162 Length=8Motif3 Start=38 Length=8Motif4 Start=50 Length=8 Download PSSM/HMM Models/Alignment:Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay
PFam ID : PF01039
PFam Domain Description : Carboxyl transferase domain
Number of Sequence in 50% Dataset : 153
Number of Sequence in Full Dataset : 3090
Average sequence length: 343.8
Pairwise Identity of Sequence in 50% Dataset : 31.3
BRP of Green color is by FASSM and of Red color is by HMMER