3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF01037

Details:

PFam ID : PF01037

PFam Domain Description : AsnC family

Number of Sequence in 50% Dataset : 484

Number of Sequence in Full Dataset : 3875

Average sequence length: 72.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01037	A5UHA7_HAEIG_1_44	72.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF01037	B1L770_KORCO_67_152	100

Sequence based PCA Plot of the family - PF01037 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=39 Length=8
Motif2 Start=1 Length=8
Motif3 Start=60 Length=11
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay